Affichage des articles dont le libellé est SNP. Afficher tous les articles
Affichage des articles dont le libellé est SNP. Afficher tous les articles

31 mai 2017

Les variantes génétiques dans la région de régulation de la transcription du MEGF10 sont associées à l'autisme chez les Han chinois

Aperçu: G.M.
Plusieurs domaines de facteur de croissance épidermique 10 (MEGF10), un membre critique de la voie d'engouement apoptotique, agissent comme médiateur de l'élagage des axones et de l'élimination des synapses lors du développement du cerveau. Des études antérieures ont indiqué que le déficit d'élagage synaptique était associé à des phénotypes liés à l'autisme. Toutefois, la relation entre le MEGF10 et l'autisme reste mal comprise.
Pour étudier le rôle des variantes de MEGF10 avec une fonction putative de régulation de la transcription dans l'étiologie de l'autisme, les chercheurs ont effectué une étude d'association familiale dans 410 trios chinois Han. Les résultats indiquent que trois polymorphismes nucléotidiques (SNP), rs4836316, rs2194079 et rs4836317 près du TSS (transcription start site) sont significativement associés à l'autisme.



Sci Rep. 2017 May 23;7(1):2292. doi: 10.1038/s41598-017-02348-1.

Genetic variants in the transcription regulatory region of MEGF10 are associated with autism in Chinese Han population

Wu Z1,2, Qin J3, You Y1,2, Ma Y4,5, Jia M1,2, Wang L1,2, Lu T1,2, Yue W1,2, Ruan Y1,2, Zhang D1,2,4,5, Li J6,7, Wang L8,9.

Author information

1
Institute of Mental Health, The Sixth Hospital, Peking University, Beijing, P. R. China.
2
Key Laboratory of Mental Health, Ministry of Health & National Clinical Research Center for Mental Disorders (Peking University), Beijing, P.R. China.
3
Central Laboratory, Renmin Hospital, Wuhan University, Wuhan, Hubei, P. R. China.
4
Peking-Tsinghua Center for Life Sciences, Peking University, Beijing, P. R. China.
5
PKU-IDG/McGovern Institute for Brain Research, Peking University, Beijing, P. R. China.
6
Institute of Mental Health, The Sixth Hospital, Peking University, Beijing, P. R. China. junli1985@bjmu.edu.cn.
7
Key Laboratory of Mental Health, Ministry of Health & National Clinical Research Center for Mental Disorders (Peking University), Beijing, P.R. China. junli1985@bjmu.edu.cn.
8
Institute of Mental Health, The Sixth Hospital, Peking University, Beijing, P. R. China. lifangwang@bjmu.edu.cn.
9
Key Laboratory of Mental Health, Ministry of Health & National Clinical Research Center for Mental Disorders (Peking University), Beijing, P.R. China. lifangwang@bjmu.edu.cn.

Abstract

Multiple epidermal growth factor-like-domains 10 (MEGF10), a critical member of the apoptotic engulfment pathway, mediates axon pruning and synapse elimination during brain development. Previous studies indicated that synaptic pruning deficit was associated with autism-related phenotypes. However, the relationship between MEGF10 and autism remains poorly understood. Disease-associated variants are significantly enriched in the transcription regulatory regions. These include the transcription start site (TSS) and its cis-regulatory elements. To investigate the role of MEGF10 variants with putative transcription regulatory function in the etiology of autism, we performed a family-based association study in 410 Chinese Han trios. Our results indicate that three single nucleotide polymorphisms (SNPs), rs4836316, rs2194079 and rs4836317 near the TSS are significantly associated with autism following Bonferroni correction (p = 0.0011, p = 0.0088, and p = 0.0023, respectively). Haplotype T-A-G (rs4836316-rs2194079-rs4836317) was preferentially transmitted from parents to affected offspring (p permutation = 0.0055). Consistently, functional exploration further verified that the risk allele and haplotype might influence its binding with transcription factors, resulting in decreased transcriptional activity of MEGF10. Our findings indicated that the risk alleles and haplotype near the MEGF10 TSS might modulate transcriptional activity and increase the susceptibility to autism.
PMID:28536440
PMCID:PMC5442155
DOI: 10.1038/s41598-017-02348-1

Les polymorphismes nucléotidiques simples dans SLC19A1 et SLC25A9 sont associés à un trouble du spectre de l'autisme chez l'enfant dans la population Han chinoise.

Aperçu: G.M.
Des variantes génétiques ont été impliquées dans le développement du trouble du spectre  de l'autisme (TSA).
Des études récentes suggèrent que les transporteurs de soluté (SLC) peuvent jouer un rôle dans l'étiologie des TSA. Le but de cette étude était de déterminer l'association entre les polymorphismes à un seul nucléotide (SNP) dans les gènes SLC19A1 et SLC25A12 avec des enfants TSA dans une population Han chinoise.
L'étude suggère que des variantes génétiques de SLC19A1 et SLC25A12 peuvent être associées à des risques pour le TSA dans l'enfance.

J Mol Neurosci. 2017 May 24. doi: 10.1007/s12031-017-0929-6. 

Single Nucleotide Polymorphisms in SLC19A1 and SLC25A9 Are Associated with Childhood Autism Spectrum Disorder in the Chinese Han Population

Author information

1
Department of Clinical Laboratory, Zhejiang Xiaoshan Hospital, Hangzhou, Zhejiang, 311202, China. 18967167212@163.com
2
Department of Clinical Laboratory, Zhejiang Xiaoshan Hospital, Hangzhou, Zhejiang, 311202, China.
3
Department of Pediatrics, Xiaoshan First Affiliated Hospital of HangzhouNormal University, Hangzhou, Zhejiang, 311201, China.
4
Department of Child and Adolescent Mental Health, Zhejiang Xiaoshan Hospital, Hangzhou, Zhejiang, 311202, China.
5
Department of Internal Medicine, Zhejiang Xiaoshan Hospital, Hangzhou, Zhejiang, 311202, China.
6
Department of Cancer Biology, Wake Forest School of Medicine, Winston Salem, NC, 27157, USA.

Abstract

Genetic variants have been implicated in the development of autism spectrum disorder (ASD). Recent studies suggest that solute carriers (SLCs) may play a role in the etiology of ASD. This purpose of this study was to determine the association between single nucleotide polymorphisms (SNPs) in SLC19A1 and SLC25A12 genes with childhood ASD in a Chinese Han population. A total of 201 autistic children and 200 age- and gender-matched healthy controls were recruited. A TaqMan probe-based real-time PCR approach was used to determine genotypes of SNPs corresponding to rs1023159 and rs1051266 in SLC19A1, and rs2056202 and rs2292813 in SLC25A12. Our results showed that both the T/T genotype of rs1051266 (odds ratio (OR) = 1.85, 95% confidence interval (CI) = 1.06-3.23, P = 0.0301) and the T allele (OR = 1.77, 95% CI = 1.07-2.90, P = 0.0249) of rs2292813 were significantly associated with an increased risk of childhood ASD. In addition, the G-C haplotype of rs1023159-rs1051266 in SCL19A1 (OR = 0.71, 95% CI = 0.51-0.98, P = 0.0389) and C-C haplotype of rs2056202-rs2292813 in SLC25A12 (OR = 0.58, 95% CI = 0.35-0.96, P = 0.0325) were associated with decreased risks of childhood ASD. There was no significant association between genotypes and allele frequencies with the severity of the disease. Our study suggests that these genetic variants of SLC19A1 and SLC25A12 may be associated with risks for childhood ASD.
PMID:28536923
DOI:10.1007/s12031-017-0929-6

20 août 2014

Association of NCAM1 Polymorphisms with Autism and Parental Age at Conception in Chinese Han Population

Traduction: G.M.

Genet Test Mol Biomarkers. 2014 Aug 19. [Epub ahead of print]

Association des polymorphismes NCAM1 avec l'autisme et l'âge parental à la conception dans la population Han chinoise

Author information

  • 1Department of Neurology, Beijing Children's Hospital Affiliated to Capital Medical University , Beijing, People's Republic of China .

Abstract

Aims

The neural cell adhesion molecule (NCAM) has been reported to be involved in the development of the central nervous system and its mRNA level might decrease in the serum of autistic patients. However, there was no evidence of the association of the NCAM1 gene polymorphisms with autism. In the present study, we enrolled 237 children with autism and 451 healthy control subjects. Then, we used the direct DNA sequencing for genotyping five tag single-nucleotide polymorphisms (SNPs) in the NCAM1 gene. 

La molécule d'adhérence cellulaire neurale (NCAM) a été signalée comme étant impliquée dans le développement du système nerveux central et son niveau d'ARNm peut diminuer dans le sérum de patients autistes. Cependant, il n'y avait aucune preuve de l'association des polymorphismes du gène NCAM1 avec l'autisme.

Dans la présente étude, nous avons enrôlè 237 enfants avec autisme et 451 sujets témoins sans autisme. Ensuite, nous avons utilisé le séquençage direct de l'ADN pour le génotypage des polymorphismes de cinq étiquettes d'un nucléotide simple (SNP) dans le gène NCAM1.

Results

By using case-control association analyses, we found that three SNPs at the NCAM1 gene were associated with autism (rs4937786, p=0.015; rs12418058, p=0.0076; rs1436109, p=0.0023). Two of them remained significant after the Bonferroni multiple testing correction (rs12418058, pcorrcted=0.038; rs1436109, pcorrcted=0.012). Moreover, two of the SNPs were associated with the parental age at conception in autism (rs12418058, p=0.037; rs1436109, p=0.01).
En utilisant l'analyse de l'association de cas-témoins, nous avons constaté que trois SNP au niveau du gène NCAM1 ont été associés à l'autisme (rs4937786, p = 0,015; rs12418058, p = 0,0076; rs1436109, p = 0,0023). Deux d'entre eux sont restés significatifs après la correction de tests multiples de Bonferroni (de rs12418058, pcorrcted = 0,038; rs1436109, pcorrcted = 0,012). En outre, deux des SNPs ont été associés à l'âge des parents lors de la conception dans l'autisme (rs12418058, p = 0,037; rs1436109, p = 0,01).

Conclusion

These results showed that NCAM1 might play an important role in the pathogenesis of autism.
Ces résultats ont montré que NCAM1 pourrait jouer un rôle important dans la pathogenèse de l'autisme.  
PMID: 25137309